This is a list of seasons played by Saba Qom F.C. in Iranian and Asian football, from 2002 to the most recent completed season. It details the club's achievements in major competitions, and the top scorers for each season. Top scorers in bold were also the top scorers in the Iranian league that season.
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| Season | League | Hazfi Cup | ACL | Leagues Top goalscorer | Manager(s) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Division | P | W | D | L | F | A | Pts | Pos | Name(s) | Goals | ||||
| 2002–03 | Div 1 | 30 | 11 | 11 | 08 | 32 | 25 | 44 | 6th | Did not enter | Mazloomi | |||
| 2003–04 | Div 1 | 30 | 18 | 09 | 03 | 54 | 28 | 63 | 1st | Did not qualify | Mazloomi | |||
| 2004–05 | IPL | 30 | 08 | 11 | 11 | 38 | 40 | 35 | 9th | Cup | Did not qualify | Ali Daei | 11 | Živadinović |
| 2005–06 | IPL | 30 | 13 | 11 | 06 | 35 | 31 | 50 | 4th | Semifinal | Group stage | Ali Daei | 11 | Jalali/Ziaei |
| 2006–07 | IPL | 30 | 07 | 11 | 12 | 28 | 31 | 32 | 13th | Final | Did not qualify | Alen Avdić | 6 | Kazemi/Ziaei |
| 2007–08 | IPL | 34 | 13 | 13 | 08 | 41 | 37 | 52 | 3rd | 1/8 Final | Did not qualify | Fereydoon Fazli | 12 | Ziaei/Golmohammadi |
| 2008–09 | IPL | 34 | 11 | 18 | 05 | 45 | 34 | 51 | 6th | Semifinal | Group Stage | Fereydoon Fazli | 14 | Firouz Karimi |
| 2009–10 | IPL | 34 | 13 | 09 | 12 | 52 | 45 | 48 | 6th | Quarter-Final | Did not qualify | Davoud Haghi | 13 | Ziaei/ Korbekandi |
| 2010-11 | IPL | 34 | 09 | 14 | 11 | 39 | 40 | 41 | 10th | Round of 32 | Did not qualify | Vahid Hamidinejad | 8 | Yavari/ Veisi |
| 2011-12 | IPL | Quarter-Final | Did not qualify | Veisi | ||||||||||
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| Champions | Runners-up | Promoted |